STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4079Bacterial transferase hexapeptide family protein. (834 aa)    
Predicted Functional Partners:
manA
Mannose-6-phosphate isomerase, class I.
  
 0.949
B005_0201
Phosphoglucomutase/phosphomannomutase, C-terminal domain protein.
  
 
 0.929
B005_0937
Phosphoglucomutase/phosphomannomutase, C-terminal domain protein.
  
 
0.929
strM
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
 
 0.849
B005_1447
Hypothetical protein.
  
  
0.822
B005_1101
Glycosyl transferases group 1 family protein.
  
 
 0.772
rfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.741
B005_2753
Short chain dehydrogenase family protein.
  
 
 0.713
B005_0571
Pyruvate phosphate dikinase, PEP/pyruvate binding domain protein.
 
   
 0.659
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.645
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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