Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| B005_1889 | B005_4097 | B005_1889 | B005_4097 | Hypothetical protein. | Proteasome accessory factor PafA2. | 0.692 |
| B005_1889 | arc | B005_1889 | B005_4096 | Hypothetical protein. | Proteasome ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.811 |
| B005_1889 | pafA | B005_1889 | B005_4102 | Hypothetical protein. | Proteasome accessory factor PafA; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.737 |
| B005_1889 | prcA | B005_1889 | B005_4101 | Hypothetical protein. | Proteasome, alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.999 |
| B005_1889 | prcB | B005_1889 | B005_4100 | Hypothetical protein. | Proteasome, beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.928 |
| B005_1889 | pup | B005_1889 | B005_4099 | Hypothetical protein. | Ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. | 0.749 |
| B005_1889 | whiB-3 | B005_1889 | B005_0982 | Hypothetical protein. | Transcription factor WhiB family protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.440 |
| B005_2822 | B005_4097 | B005_2822 | B005_4097 | Polyketide cyclase / dehydrase and lipid transport family protein. | Proteasome accessory factor PafA2. | 0.473 |
| B005_2822 | arc | B005_2822 | B005_4096 | Polyketide cyclase / dehydrase and lipid transport family protein. | Proteasome ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.437 |
| B005_2822 | mshD | B005_2822 | B005_1560 | Polyketide cyclase / dehydrase and lipid transport family protein. | Mycothiol synthase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol. | 0.586 |
| B005_2822 | pafA | B005_2822 | B005_4102 | Polyketide cyclase / dehydrase and lipid transport family protein. | Proteasome accessory factor PafA; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.565 |
| B005_2822 | prcA | B005_2822 | B005_4101 | Polyketide cyclase / dehydrase and lipid transport family protein. | Proteasome, alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.471 |
| B005_2822 | pup | B005_2822 | B005_4099 | Polyketide cyclase / dehydrase and lipid transport family protein. | Ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. | 0.543 |
| B005_4097 | B005_1889 | B005_4097 | B005_1889 | Proteasome accessory factor PafA2. | Hypothetical protein. | 0.692 |
| B005_4097 | B005_2822 | B005_4097 | B005_2822 | Proteasome accessory factor PafA2. | Polyketide cyclase / dehydrase and lipid transport family protein. | 0.473 |
| B005_4097 | arc | B005_4097 | B005_4096 | Proteasome accessory factor PafA2. | Proteasome ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.914 |
| B005_4097 | prcA | B005_4097 | B005_4101 | Proteasome accessory factor PafA2. | Proteasome, alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.878 |
| B005_4097 | prcB | B005_4097 | B005_4100 | Proteasome accessory factor PafA2. | Proteasome, beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.866 |
| B005_4097 | pup | B005_4097 | B005_4099 | Proteasome accessory factor PafA2. | Ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. | 0.864 |
| arc | B005_1889 | B005_4096 | B005_1889 | Proteasome ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | Hypothetical protein. | 0.811 |
page 1 of 4