STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4171Methyltransferase domain protein. (240 aa)    
Predicted Functional Partners:
B005_4172
Hypothetical protein.
 
     0.921
B005_4173
GHMP kinase N terminal domain protein.
 
     0.909
B005_4174
Pyridoxal-phosphate dependent enzyme family protein.
 
     0.857
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
 
 0.794
B005_1692
Type VII secretion integral membrane protein EccD.
  
     0.731
B005_0748
AMP-binding enzyme family protein.
  
     0.616
B005_4170
Major Facilitator Superfamily protein.
 
     0.590
B005_2449
Haloacid dehalogenase-like hydrolase family protein.
 
     0.582
B005_3489
Hypothetical protein.
  
     0.582
B005_4692
Hypothetical protein.
    
 0.579
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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