STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4231Transaminase; Overlaps another CDS with the same product name; Belongs to the DegT/DnrJ/EryC1 family. (401 aa)    
Predicted Functional Partners:
B005_4228
Oxidoreductase, NAD-binding Rossmann fold family protein.
 
  
 0.826
B005_4232
Transaminase; Overlaps another CDS with the same product name; Belongs to the DegT/DnrJ/EryC1 family.
 
    
0.813
B005_4234
FAD binding domain protein.
 
     0.808
B005_4235
AMP-binding enzyme family protein.
 
     0.805
B005_4233
ubiA prenyltransferase family protein.
       0.782
B005_4236
coA-transferase III family protein; Belongs to the CoA-transferase III family.
       0.782
B005_4237
AMP-binding enzyme family protein.
       0.776
B005_4238
Methyltransferase domain protein.
  
    0.775
B005_1437
Nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.715
B005_1029
Nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.712
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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