STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4238Methyltransferase domain protein. (266 aa)    
Predicted Functional Partners:
B005_4234
FAD binding domain protein.
 
     0.846
B005_4237
AMP-binding enzyme family protein.
 
     0.819
B005_4235
AMP-binding enzyme family protein.
 
     0.817
B005_4233
ubiA prenyltransferase family protein.
     
 0.807
B005_4236
coA-transferase III family protein; Belongs to the CoA-transferase III family.
 
     0.800
B005_4231
Transaminase; Overlaps another CDS with the same product name; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.775
B005_4232
Transaminase; Overlaps another CDS with the same product name; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.775
B005_4230
Calerythrin.
 
     0.696
B005_4229
Hypothetical protein.
 
     0.585
B005_4226
Peptidase M20/M25/M40 family protein.
 
     0.577
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.