STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4252Helix-turn-helix family protein. (251 aa)    
Predicted Functional Partners:
B005_4253
DNA alkylation repair enzyme family protein.
       0.611
B005_0525
Nuclease-related domain protein.
 
     0.589
B005_4251
Transcriptional regulatory protein devR.
  
   0.571
B005_5241
Hypothetical protein.
  
     0.540
B005_2799
GAF domain protein.
  
     0.538
B005_3711
Hypothetical protein.
   
    0.532
B005_1038
Hypothetical protein.
 
     0.506
B005_4250
Universal stress family protein.
  
  
 0.503
B005_2937
Hypothetical protein.
  
     0.470
B005_0730
Hypothetical protein.
  
     0.459
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.