STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4281Major Facilitator Superfamily protein. (464 aa)    
Predicted Functional Partners:
B005_4282
Siderophore-interacting FAD-binding domain protein.
 
     0.832
B005_4280
Protein mbtH.
 
    0.766
B005_4279
Periplasmic binding family protein.
 
  
 0.699
dhbB
Isochorismatase.
 
  
 0.600
B005_1634
Major Facilitator Superfamily protein.
  
     0.534
B005_4278
Amino acid adenylation domain protein; Overlaps another CDS with the same product name.
 
  
 0.527
dhbC
Isochorismate synthase dhbC.
 
    0.512
B005_4271
(2,3-dihydroxybenzoyl)adenylate synthase.
 
    0.506
B005_4274
Non-ribosomal peptide synthase TIGR01720 domain protein.
 
    0.501
B005_4277
Amino acid adenylation domain protein; Overlaps another CDS with the same product name.
 
    0.481
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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