rpmF-2 protein (Nocardiopsis alba) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

rpmF-2

Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (56 aa)

Predicted Functional Partners:

rplT

0.999

rplV

0.999

rplQ

0.999

rpmJ

0.945

rpmG-3

0.936

rpsP

0.929

rpsO

0.925

rplR

0.925

rpmB-2

0.923

rpmE2-2

0.920

Your Current Organism:

Nocardiopsis alba

NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplQ	rplR	B005_2734	B005_2721	Ribosomal protein L17.	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplQ	rplT	B005_2734	B005_0031	Ribosomal protein L17.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplQ	rplV	B005_2734	B005_2710	Ribosomal protein L17.	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.999
rplQ	rpmB-2	B005_2734	B005_3047	Ribosomal protein L17.	Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rplQ	rpmE2-2	B005_2734	B005_4287	Ribosomal protein L17.	Ribosomal protein L31.	0.816
rplQ	rpmF-2	B005_2734	B005_4286	Ribosomal protein L17.	Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.999
rplQ	rpmG-3	B005_2734	B005_4288	Ribosomal protein L17.	Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.880
rplQ	rpmJ	B005_2734	B005_2730	Ribosomal protein L17.	Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.999
rplQ	rpsO	B005_2734	B005_0719	Ribosomal protein L17.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rplQ	rpsP	B005_2734	B005_3076	Ribosomal protein L17.	Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rplR	rplQ	B005_2721	B005_2734	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Ribosomal protein L17.	0.999
rplR	rplT	B005_2721	B005_0031	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplR	rplV	B005_2721	B005_2710	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.999
rplR	rpmB-2	B005_2721	B005_3047	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rplR	rpmE2-2	B005_2721	B005_4287	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Ribosomal protein L31.	0.727
rplR	rpmF-2	B005_2721	B005_4286	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.925
rplR	rpmG-3	B005_2721	B005_4288	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.878
rplR	rpmJ	B005_2721	B005_2730	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.999
rplR	rpsO	B005_2721	B005_0719	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rplR	rpsP	B005_2721	B005_3076	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999