STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4297acyl-CoA dehydrogenase, N-terminal domain protein. (387 aa)    
Predicted Functional Partners:
B005_3122
Electron transfer flavodomain protein.
 
 
 0.864
B005_3123
Electron transfer flavodomain protein.
 
 0.855
B005_5381
enoyl-CoA hydratase/isomerase family protein.
  
 0.828
B005_4292
Hypothetical protein.
       0.752
B005_4293
Major Facilitator Superfamily protein.
       0.752
B005_4294
HAD hydrolase, IA, variant 1 family protein.
       0.752
psuG
Indigoidine synthase A like family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
       0.752
B005_4296
Transglutaminase-like superfamily protein.
       0.752
B005_4298
Ectoine synthase family protein.
       0.741
B005_5189
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.667
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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