STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4308Hypothetical protein. (193 aa)    
Predicted Functional Partners:
B005_4307
Dyp-type peroxidase family protein.
 
  
 0.980
B005_4309
copC domain protein.
 
    0.947
B005_0096
Cytochrome c family protein.
  
 
 0.879
B005_0095
Rieske domain protein.
  
 
 0.876
B005_0094
Cytochrome b/b6/petB family protein.
   
 
 0.856
coxB
Cytochrome c oxidase, subunit II.
  
   0.848
B005_0111
Cytochrome c oxidase subunit IV family protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
    
   0.811
B005_4520
Dyp-type peroxidase family protein.
 
  
 0.795
ctaE
Cytochrome c oxidase subunit 3.
  
   0.772
B005_2807
copC domain protein.
 
    0.772
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.