STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4337Transcriptional regulatory family protein. (1046 aa)    
Predicted Functional Partners:
B005_5033
Tetratricopeptide repeat family protein.
  
  
 0.806
B005_0342
Cytidine and deoxycytidylate deaminase zinc-binding region family protein.
   
  
 0.544
B005_1125
Cell envelope-related function transcriptional attenuator common domain protein.
   
    0.537
B005_0210
HAD hydrolase, IA, variant 1 family protein.
   
    0.536
B005_4798
Bacterial regulatory helix-turn-helix s, AraC family protein.
   
    0.536
argP
Transcriptional regulator, ArgP family protein; Belongs to the LysR transcriptional regulatory family.
   
    0.535
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
   
  
 0.527
B005_0811
Helix-turn-helix family protein.
  
    0.492
B005_5507
Bacterial regulatory, arsR family protein.
   
    0.472
B005_1494
Helix-turn-helix family protein.
  
    0.470
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.