STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4356Tripartite tricarboxylate transporter TctA family protein. (504 aa)    
Predicted Functional Partners:
B005_4358
Tripartite tricarboxylate transporter receptor family protein.
 
  
 0.977
B005_2639
Tripartite tricarboxylate transporter TctA family protein.
  
  
 
0.911
B005_2641
Tripartite tricarboxylate transporter receptor family protein.
 
  
 0.910
B005_5091
Tripartite tricarboxylate transporter TctA family protein.
     
  0.900
B005_4357
Tripartite tricarboxylate transporter TctB family protein.
  
  
 0.898
B005_2640
Tripartite tricarboxylate transporter TctB family protein.
 
  
 0.874
B005_1182
TRAP transporter, 4TM/12TM fusion family protein.
  
     0.654
B005_1184
TRAP transporter solute receptor, TAXI family protein.
  
     0.540
B005_2643
Response regulator.
 
     0.425
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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