STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4387Low molecular weight phosphotyrosine phosphatase family protein. (138 aa)    
Predicted Functional Partners:
arsB
Arsenical-resistance protein.
  
 0.994
B005_4385
Bacterial regulatory, arsR family protein.
  
 0.917
cadI
Cadmium-induced protein CadI.
  
  
 0.648
B005_2393
Metallo-beta-lactamase superfamily protein.
  
 
 0.635
B005_2395
Sodium Bile acid symporter family protein.
  
 0.618
B005_1753
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.474
B005_1976
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.474
B005_3235
Thioredoxin family protein.
  
 
 0.474
B005_4832
Thioredoxin family protein; Belongs to the thioredoxin family.
  
 
 0.474
ybeY
Putative rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
   0.469
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.