STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4442NADPH-dependent FMN reductase family protein. (268 aa)    
Predicted Functional Partners:
B005_0071
nmrA-like family protein.
  
 
  0.901
B005_4992
nmrA-like family protein.
  
 
  0.901
B005_0706
Methyltransferase domain protein.
     
  0.900
menG
Ubiquinone/menaquinone biosynthesis methyltransferase family protein; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
     
  0.900
B005_2951
Flavodoxin-like fold family protein; Overlaps another CDS with the same product name.
  
     0.751
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.615
B005_0708
Putative beta-carotene desaturase/methylase.
  
     0.607
B005_4443
hxlR-like helix-turn-helix family protein.
     
 0.559
B005_1589
Hypothetical protein.
  
     0.540
B005_3531
Arylamine N-acetyltransferase; Belongs to the arylamine N-acetyltransferase family.
  
     0.459
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.