STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4476Putative translation initiation factor IF-2. (560 aa)    
Predicted Functional Partners:
B005_2169
Thiopeptide-type bacteriocin biosynthesis domain protein.
 
    0.736
B005_4395
Lantibiotic dehydratase domain protein.
 
    0.716
B005_4189
protein-L-isoaspartate(D-aspartate) O-methyltransferase family protein.
  
     0.704
B005_4396
Thiopeptide-type bacteriocin biosynthesis domain protein.
 
    0.682
B005_4727
DNA binding, excisionase family domain protein.
  
     0.660
B005_4397
Lanthionine synthetase C-like family protein.
  
     0.626
B005_2168
Lanthionine synthetase C-like family protein.
  
     0.611
B005_4193
Hypothetical protein.
  
     0.600
B005_2167
Thiopeptide-type bacteriocin biosynthesis domain protein.
  
     0.562
B005_0315
Putative dNA-binding protein.
  
     0.549
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.