B005_4486 protein (Nocardiopsis alba) - STRING interaction network

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Score

B005_4486

Heme ABC exporter, ATP-binding protein CcmA. (546 aa)

Predicted Functional Partners:

B005_4981

0.920

rpmC

0.583

rpsO

0.575

rplM

0.572

rplU

0.570

rpsC

0.566

rplC

0.565

rpsG

0.554

rplT

0.552

rpsK

0.552

Your Current Organism:

Nocardiopsis alba

NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B005_4486	B005_4981	B005_4486	B005_4981	Heme ABC exporter, ATP-binding protein CcmA.	Heme ABC exporter, ATP-binding protein CcmA.	0.920
B005_4486	rplC	B005_4486	B005_2704	Heme ABC exporter, ATP-binding protein CcmA.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.565
B005_4486	rplM	B005_4486	B005_2738	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.572
B005_4486	rplT	B005_4486	B005_0031	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.552
B005_4486	rplU	B005_4486	B005_0484	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.570
B005_4486	rpmC	B005_4486	B005_2713	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.583
B005_4486	rpsC	B005_4486	B005_2711	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.566
B005_4486	rpsG	B005_4486	B005_2700	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.554
B005_4486	rpsK	B005_4486	B005_2732	Heme ABC exporter, ATP-binding protein CcmA.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.552
B005_4486	rpsO	B005_4486	B005_0719	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.575
B005_4981	B005_4486	B005_4981	B005_4486	Heme ABC exporter, ATP-binding protein CcmA.	Heme ABC exporter, ATP-binding protein CcmA.	0.920
B005_4981	rplC	B005_4981	B005_2704	Heme ABC exporter, ATP-binding protein CcmA.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.565
B005_4981	rplM	B005_4981	B005_2738	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.572
B005_4981	rplT	B005_4981	B005_0031	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.552
B005_4981	rplU	B005_4981	B005_0484	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.570
B005_4981	rpmC	B005_4981	B005_2713	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.583
B005_4981	rpsC	B005_4981	B005_2711	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.566
B005_4981	rpsG	B005_4981	B005_2700	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.554
B005_4981	rpsK	B005_4981	B005_2732	Heme ABC exporter, ATP-binding protein CcmA.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.552
B005_4981	rpsO	B005_4981	B005_0719	Heme ABC exporter, ATP-binding protein CcmA.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.575