STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
puoPutrescine oxidase. (468 aa)    
Predicted Functional Partners:
speB
Agmatinase; Belongs to the arginase family.
 
  
 0.930
speE
Spermine/spermidine synthase family protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
   
 
 0.907
B005_0026
Aminotransferase class-III family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.906
B005_0205
Aldehyde dehydrogenase family protein; Overlaps another CDS with the same product name.
   
 0.902
B005_0518
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
 0.902
B005_4869
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
 0.902
B005_4874
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.902
B005_4260
Zinc carboxypeptidase family protein.
     
  0.900
B005_4494
Bacterial regulatory s, tetR family protein.
 
     0.827
B005_2591
Histone deacetylase domain protein.
   
 0.694
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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