STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4572Bacterial PH domain protein; Overlaps another CDS with the same product name. (593 aa)    
Predicted Functional Partners:
B005_4573
Bacterial PH domain protein; Overlaps another CDS with the same product name.
 
  
 0.965
B005_5439
Bacterial PH domain protein; Overlaps another CDS with the same product name.
 
  
 0.838
B005_4574
SPFH domain / Band 7 family protein.
       0.549
B005_3658
Hypothetical protein.
 
    0.531
B005_4575
Hypothetical protein.
       0.518
B005_5498
Hypothetical protein.
  
     0.509
B005_2583
Subtilisin inhibitor-like 2 domain protein.
  
     0.431
B005_2456
Acyltransferase family protein.
  
     0.424
B005_0440
Bacterial regulatory s, tetR family protein.
  
     0.402
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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