STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4581Bacterial regulatory helix-turn-helix, lysR family protein. (550 aa)    
Predicted Functional Partners:
speB
Agmatinase; Belongs to the arginase family.
 
     0.713
B005_3494
Magnesium transporter NIPA family protein.
  
     0.649
B005_3998
Hypothetical protein.
  
     0.572
B005_4776
eamA-like transporter family protein.
  
     0.545
B005_3754
Hypothetical protein.
  
     0.542
B005_2668
recF/RecN/SMC N terminal domain protein.
  
     0.482
B005_3265
rNA polymerase, sigma-24 subunit, ECF subfamily.
  
    0.455
B005_0471
paaX-like C-terminal domain protein.
  
    0.442
B005_3857
Hypothetical protein.
  
    0.438
B005_2219
Methylamine utilization MauE family protein.
  
     0.436
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.