STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_45972Fe-2S iron-sulfur cluster binding domain protein. (171 aa)    
Predicted Functional Partners:
pucD
Xanthine dehydrogenase D subunit.
 
 0.999
B005_4598
FAD binding domain in molybdopterin dehydrogenase family protein.
 
 0.999
xdhB
Xanthine dehydrogenase, molybdopterin binding subunit.
     0.972
B005_4596
Amidohydrolase family protein.
 
  
 0.884
B005_3767
Xanthine dehydrogenase.
 
  
 0.836
B005_3768
Hypothetical protein.
 
  
 0.791
xdhC
Xanthine dehydrogenase accessory protein XdhC.
 
  
 0.694
B005_4594
Permease family protein.
     
 0.476
B005_4599
Hypothetical protein.
       0.455
B005_3627
OHCU decarboxylase family protein.
 
   
 0.426
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.