STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4686Right handed beta helix region family protein. (359 aa)    
Predicted Functional Partners:
gdpmt
Geranyl diphosphate 2-C-methyltransferase.
  
     0.734
B005_4057
Terpene synthase family, metal binding domain protein.
  
     0.723
B005_2146
Hypothetical protein.
  
     0.622
B005_3371
enoyl-(Acyl carrier) reductase family protein.
  
     0.531
B005_3970
Cellulase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.523
B005_4687
Bacterial regulatory s, luxR family protein.
  
    0.507
B005_4688
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
       0.494
B005_4689
ABC-2 transporter family protein.
       0.476
B005_4690
ABC transporter family protein.
       0.476
B005_4804
Dioxygenase family protein.
  
     0.464
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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