STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoDAlkaline phosphatase D. (531 aa)    
Predicted Functional Partners:
folE
GTP cyclohydrolase I.
    
 0.976
folB
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.975
B005_2558
Dihydropteroate synthase.
      
 0.609
B005_1329
Glycerophosphoryl diester phosphodiesterase family protein.
 
  
 0.533
B005_4698
Hypothetical protein.
     
 0.511
B005_4700
Iron dependent repressor, N-terminal DNA binding domain protein.
       0.438
phoU
Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.
      
 0.422
folC
Bifunctional FolC family protein.
      
 0.418
B005_0497
Putative folC bifunctional protein.
      
 0.418
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.