STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4727DNA binding, excisionase family domain protein. (144 aa)    
Predicted Functional Partners:
B005_4728
Winged helix DNA-binding domain protein.
 
     0.752
B005_4476
Putative translation initiation factor IF-2.
  
     0.660
B005_2975
Hypothetical protein.
  
     0.659
B005_4334
Hypothetical protein.
  
     0.656
B005_1864
Bacterial regulatory s, tetR family protein.
  
     0.581
B005_2172
Helix-turn-helix domain protein.
  
     0.565
B005_4726
Putative membrane protein.
       0.553
B005_3701
Histidine kinase-like ATPase domain protein.
  
     0.546
B005_4715
Major Facilitator Superfamily protein.
  
     0.536
B005_4725
Ferric iron reductase FhuF-like transporter family protein.
       0.523
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.