STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4773Oxidoreductase, NAD-binding Rossmann fold family protein. (341 aa)    
Predicted Functional Partners:
B005_1362
Zeta toxin family protein.
  
     0.682
B005_4225
Xylose isomerase-like TIM barrel family protein.
 
  
 0.639
B005_4029
Hypothetical protein.
  
     0.617
B005_1225
Putative DNA-binding protein.
 
  
 0.561
B005_3440
Hypothetical protein.
  
     0.561
B005_1600
Hypothetical protein.
  
     0.529
lysS
lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.529
B005_4772
Hypothetical protein.
       0.529
B005_1215
Xylose isomerase-like TIM barrel family protein.
 
  
 0.522
B005_1665
Lantibiotic dehydratase domain protein.
  
     0.509
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.