STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4809Sigma-70 region 2 family protein; Belongs to the sigma-70 factor family. (208 aa)    
Predicted Functional Partners:
B005_4808
RNA polymerase, sigma-24 subunit, ECF subfamily domain protein.
     0.938
B005_1633
YCII-related domain protein.
 
     0.785
B005_4810
Hypothetical protein.
       0.779
B005_4721
YCII-related domain protein.
 
     0.532
B005_2646
RNA polymerase sigma factor, sigma-70 family protein.
  
   
 0.498
B005_5476
ribD C-terminal domain protein.
  
     0.438
B005_4811
Phosphotransferase enzyme family protein.
       0.412
B005_4953
RNA polymerase sigma factor, sigma-70 family protein.
  
   
 0.405
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.