STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4855NUDIX domain protein. (251 aa)    
Predicted Functional Partners:
B005_4854
HAD hydrolase, IA, variant 1 family protein.
  
    0.755
B005_1881
Hypothetical protein.
  
     0.619
B005_3720
Hypothetical protein.
  
     0.517
B005_2066
PAP2 superfamily protein.
 
    0.514
B005_4853
Von Willebrand factor type A.
       0.484
B005_3116
ABC-type cobalt transport system, permease component family protein.
  
     0.443
B005_2912
Hypothetical protein.
  
     0.432
B005_3118
Cobalt transport family protein.
  
     0.432
B005_0387
TPR repeat family protein.
  
     0.431
B005_3117
Cobalt ABC transporter, ATP-binding family protein.
  
     0.418
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.