STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4912Transposase DDE domain protein. (226 aa)    
Predicted Functional Partners:
B005_3196
L-lactate permease family protein; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.717
B005_5124
Alanine--glyoxylate aminotransferase.
 
 0.618
B005_3656
4Fe-4S dicluster domain protein.
  
 0.554
B005_5158
DDE superendonuclease family protein.
  
    0.520
B005_1883
Hypothetical protein.
 
     0.517
B005_4913
Hypothetical protein.
       0.512
B005_4758
Bacterial regulatory s, tetR family protein.
  
   
 0.468
B005_4261
Hypothetical protein.
  
 
   0.463
B005_0994
FAD binding domain protein.
  
 
 0.452
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.449
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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