STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4935ftsX-like permease family protein. (376 aa)    
Predicted Functional Partners:
B005_4934
ABC transporter family protein.
 
 0.966
B005_4933
Bacterial regulatory s, tetR family protein.
 
     0.915
B005_0690
ABC transporter family protein.
 
 0.837
B005_0969
hlyD secretion family protein.
 
 
 0.718
B005_4162
Hypothetical protein.
  
 
 0.681
B005_0970
ABC transporter family protein.
 
 
 0.585
B005_2112
ABC transporter family protein.
 
 
 0.585
B005_2284
ABC transporter family protein.
 
 
 0.585
B005_3577
ABC transporter family protein.
 
 
 0.585
B005_5323
ABC transporter family protein.
 
 
 0.585
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.