STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_4990TPR repeat family protein. (791 aa)    
Predicted Functional Partners:
B005_3094
Transcriptional regulator, SARP family protein.
 
    0.897
B005_4304
Transcriptional regulator, SARP family protein.
 
    0.798
B005_1166
Helix-turn-helix domain protein.
  
    0.699
B005_5032
Transcriptional regulator, winged helix family protein.
 
    0.670
B005_4988
Hypothetical protein.
       0.656
B005_4989
Hypothetical protein.
       0.649
B005_0901
Helix-turn-helix domain protein.
  
    0.644
B005_3145
Hypothetical protein.
  
     0.626
B005_0156
Putative transcriptional regulator, TetR family protein.
  
    0.618
B005_1407
Helix-turn-helix family protein.
  
    0.616
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.