STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_5065alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain protein. (718 aa)    
Predicted Functional Partners:
B005_2972
Tetratricopeptide repeat family protein.
  
 
 0.652
acnA
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 
 0.627
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
 
 
   0.585
B005_5067
Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.
       0.583
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
   0.576
B005_5066
Bacterial extracellular solute-binding family protein.
  
  
 0.569
B005_5068
Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.
  
  
 0.552
B005_3493
Glycosyl hydrolase family 20, catalytic domain protein.
 
 
 
 0.551
B005_3441
Hypothetical protein.
    
 0.546
B005_1589
Hypothetical protein.
  
     0.543
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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