STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_5116Periplasmic binding s and sugar binding domain of LacI family protein. (339 aa)    
Predicted Functional Partners:
B005_0258
Periplasmic sugar-binding domain protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.671
B005_3860
GXGXG motif family protein.
    
 
 0.659
ptsH
Phosphocarrier protein HPr.
   
 
 0.559
B005_2270
pfkB carbohydrate kinase family protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.534
B005_2878
Bacterial regulatory s, gntR family protein.
  
   
 0.482
xylB
Xylulokinase.
 
 
 
 0.458
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.457
B005_1636
Amino acid adenylation domain protein.
    
 
 0.444
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
   0.434
cysC
Sulfate adenylyltransferase, adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
    
   0.434
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.