STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_51454Fe-4S binding domain protein. (294 aa)    
Predicted Functional Partners:
B005_5144
Molybdopterin dinucleotide binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.997
B005_5146
Polysulfide reductase, NrfD family protein.
 
  
 0.966
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.929
amdA
Acetamidase.
 
  
  0.914
B005_2787
Molybdopterin dinucleotide binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.903
B005_0574
Zinc-binding dehydrogenase family protein.
     
 0.902
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
     
  0.900
B005_4962
Prolyl oligopeptidase family protein.
     
  0.900
B005_5215
Cyclase family protein.
     
  0.900
B005_0096
Cytochrome c family protein.
  
 
 0.889
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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