STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
manBeta-mannanase domain protein. (65 aa)    
Predicted Functional Partners:
B005_5165
Glycosyl hydrolases 6 family protein; Belongs to the glycosyl hydrolase family 6.
 
   
 0.916
B005_5163
Chitin binding domain protein.
 
  
 0.908
B005_5511
Ricin-type beta-trefoil lectin domain-like family protein.
 
   
 0.694
B005_3405
Pectate lyase family protein.
  
     0.687
B005_2911
LPXTG cell wall anchor domain protein.
 
  
 0.643
B005_0823
Glycosyl hydrolases family 2, TIM barrel domain protein.
  
   
 0.635
cex
Exoglucanase/xylanase.
 
   
 0.630
B005_3231
Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
 
 
 0.539
chtA
Chitinase 63.
 
 
 
 0.525
B005_3655
Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
 
 
 0.522
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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