STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B005_5185Phenylacetic acid catabolic family protein. (324 aa)    
Predicted Functional Partners:
B005_5184
Phenylacetic acid degradation B.
 
 0.998
B005_5183
Phenylacetic acid catabolic family protein.
  
  0.997
B005_5181
2Fe-2S iron-sulfur cluster binding domain protein.
 
 0.995
B005_5182
phenylacetate-CoA oxygenase, PaaJ subunit.
 
 
 0.995
paaD
Phenylacetic acid degradation protein PaaD.
 
 
 0.991
paaF
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.973
B005_5186
Putative enoyl-CoA hydratase.
 
 
 0.963
paaN
Phenylacetic acid degradation protein paaN.
 
  
 0.843
B005_5187
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain protein.
  
  
 0.528
B005_5188
enoyl-CoA hydratase/isomerase family protein.
  
  
 0.489
Your Current Organism:
Nocardiopsis alba
NCBI taxonomy Id: 1205910
Other names: N. alba ATCC BAA-2165, Nocardiopsis alba ATCC BAA-2165, Nocardiopsis alba BE74
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