STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF56675.1Hypothetical protein. (187 aa)    
Predicted Functional Partners:
SHF56716.1
Butirosin biosynthesis protein H, N-terminal.
   
   0.988
SHF57052.1
[lysine-biosynthesis-protein LysW]---L-2-aminoadipate ligase; Belongs to the RimK family.
       0.802
SHF56932.1
Transketolase subunit A.
       0.801
SHF56751.1
Amino acid adenylation domain-containing protein.
       0.791
SHF56971.1
Transketolase.
       0.789
SHF57007.1
Alpha-aminoadipate carrier protein LysW.
       0.779
SHF56820.1
Acyl-CoA dehydrogenase, C-terminal domain.
       0.777
SHF56786.1
Acyl-CoA dehydrogenase.
       0.773
SHF56857.1
Cytochrome P450.
       0.773
SHF56896.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
       0.773
Your Current Organism:
Jatrophihabitans endophyticus
NCBI taxonomy Id: 1206085
Other names: DSM 45627, Frankia sp. S9-650, J. endophyticus, Jatrophihabitans endophyticus Madhaiyan et al. 2013, KACC 16232, strain S9-650
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.