STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF70089.1Peptide/nickel transport system substrate-binding protein. (530 aa)    
Predicted Functional Partners:
SHF70009.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.
 0.982
SHF70048.1
Peptide/nickel transport system permease protein.
 0.964
SHF70126.1
CubicO group peptidase, beta-lactamase class C family.
     0.940
SHF69924.1
Glutamate carboxypeptidase.
     0.935
SHF69888.1
Predicted acetyltransferase, GNAT superfamily.
     0.934
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
     0.897
SHF69970.1
ABC transporter.
 
  0.863
SHF79781.1
Peptide/nickel transport system substrate-binding protein/oligopeptide transport system substrate-binding protein.
 
 
 0.825
SHH01051.1
Peptide/nickel transport system substrate-binding protein.
  
  
 
0.776
SHF69778.1
DNA-binding transcriptional regulator, PucR family.
 
    0.773
Your Current Organism:
Jatrophihabitans endophyticus
NCBI taxonomy Id: 1206085
Other names: DSM 45627, Frankia sp. S9-650, J. endophyticus, Jatrophihabitans endophyticus Madhaiyan et al. 2013, KACC 16232, strain S9-650
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.