STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF70683.1Two-component system, OmpR family, KDP operon response regulator KdpE. (228 aa)    
Predicted Functional Partners:
SHG11557.1
PAS/PAC sensor hybrid histidine kinase.
 0.991
SHF70643.1
Two-component system, OmpR family, sensor histidine kinase KdpD.
 0.986
SHG31813.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 0.974
SHF78918.1
Osmosensitive K+ channel signal transduction histidine kinase.
 0.969
SHF72212.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.964
SHH18287.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
 0.915
SHF76008.1
Signal transduction histidine kinase.
 0.911
SHG63629.1
Two-component system, OmpR family, sensor kinase.
 0.909
SHH33778.1
Signal transduction histidine kinase.
 0.906
SHG73153.1
Hypothetical protein.
 0.900
Your Current Organism:
Jatrophihabitans endophyticus
NCBI taxonomy Id: 1206085
Other names: DSM 45627, Frankia sp. S9-650, J. endophyticus, Jatrophihabitans endophyticus Madhaiyan et al. 2013, KACC 16232, strain S9-650
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