STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF79305.13-oxoadipate CoA-transferase, beta subunit. (226 aa)    
Predicted Functional Partners:
SHF79346.1
3-oxoadipate CoA-transferase, alpha subunit.
 0.999
SHF61409.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 
 0.891
SHG53612.1
acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.857
SHF66205.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.856
SHG24911.1
hydroxymethylglutaryl-CoA lyase.
  
 
 0.828
SHF61370.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.827
SHF65201.1
acetoacetyl-CoA synthetase.
  
 
 0.819
SHF66507.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.816
SHF77307.1
4-carboxymuconolactone decarboxylase.
 
 
 0.810
SHF62983.1
Protocatechuate 3,4-dioxygenase, beta subunit.
 
 
 0.791
Your Current Organism:
Jatrophihabitans endophyticus
NCBI taxonomy Id: 1206085
Other names: DSM 45627, Frankia sp. S9-650, J. endophyticus, Jatrophihabitans endophyticus Madhaiyan et al. 2013, KACC 16232, strain S9-650
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