STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG09847.1Protein of unknown function. (68 aa)    
Predicted Functional Partners:
SHG09815.1
TadE-like protein.
     
 0.858
SHG10214.1
Hypothetical protein.
 
     0.669
SHG09995.1
Pilus assembly protein CpaF.
     
 0.575
SHG09918.1
Flp pilus assembly protein TadB.
     
 0.551
SHG09958.1
Type II secretion system protein F (GspF).
     
 0.548
SHG71190.1
Protein of unknown function.
  
     0.505
SHG10026.1
MinD-like ATPase involved in chromosome partitioning or flagellar assembly.
       0.480
SHH29126.1
Pilus assembly protein CpaF.
     
 0.447
SHG10064.1
HAD-superfamily subfamily IB hydrolase, TIGR01490.
       0.443
SHF83613.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
     0.436
Your Current Organism:
Jatrophihabitans endophyticus
NCBI taxonomy Id: 1206085
Other names: DSM 45627, Frankia sp. S9-650, J. endophyticus, Jatrophihabitans endophyticus Madhaiyan et al. 2013, KACC 16232, strain S9-650
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.