STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG10869.1Hypothetical protein. (304 aa)    
Predicted Functional Partners:
SHG10831.1
Hypothetical protein.
       0.691
SHG73283.1
Protein of unknown function.
  
     0.615
SHH57026.1
C-terminal four TMM region of protein-O-mannosyltransferase.
  
     0.562
SHG55078.1
Protein of unknown function.
  
     0.520
SHG20241.1
Protein of unknown function.
  
     0.495
SHG57486.1
Protein of unknown function.
  
     0.479
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.469
SHG10928.1
Protein of unknown function.
       0.468
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
    0.461
SHF84194.1
Lipoprotein LpqB beta-propeller domain-containing protein.
  
     0.457
Your Current Organism:
Jatrophihabitans endophyticus
NCBI taxonomy Id: 1206085
Other names: DSM 45627, Frankia sp. S9-650, J. endophyticus, Jatrophihabitans endophyticus Madhaiyan et al. 2013, KACC 16232, strain S9-650
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.