STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG19658.1Putative peptidoglycan lipid II flippase. (627 aa)    
Predicted Functional Partners:
SHG23991.1
Inner membrane component of T3SS domain-containing protein.
  
 
 
 0.980
SHG19624.1
Hypothetical protein.
 
     0.868
SHG19691.1
Thioredoxin reductase (NADPH).
     
 0.802
SHG19590.1
NUDIX domain-containing protein; Belongs to the Nudix hydrolase family.
       0.755
SHG79868.1
Zinc-ribbon domain-containing protein.
  
 
   0.726
SHG50344.1
DNA polymerase III, delta subunit.
 
  
 0.690
SHG19723.1
Thioredoxin; Belongs to the thioredoxin family.
       0.658
SHG19759.1
N-acetylmuramoyl-L-alanine amidase.
 
   
 0.655
SHG24081.1
Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Belongs to the SEDS family.
  
  
 0.652
SHG19558.1
poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.629
Your Current Organism:
Jatrophihabitans endophyticus
NCBI taxonomy Id: 1206085
Other names: DSM 45627, Frankia sp. S9-650, J. endophyticus, Jatrophihabitans endophyticus Madhaiyan et al. 2013, KACC 16232, strain S9-650
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