STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG95882.1Calcineurin-like phosphoesterase. (283 aa)    
Predicted Functional Partners:
SHG00386.1
WD40 repeat.
   
 0.962
SHG00964.1
Ig-like domain-containing protein.
   
 0.962
SHF48485.1
DinB superfamily protein.
    
 0.952
SHF82466.1
Hypothetical protein.
    
 0.952
SHF82501.1
Mce-associated membrane protein.
    
 0.952
SHG05735.1
Hypothetical protein.
    
 0.952
SHH00058.1
Hypothetical protein.
    
 0.952
SHG08282.1
Peptidylprolyl isomerase.
    
 0.914
SHG65326.1
FKBP-type peptidyl-prolyl cis-trans isomerase.
    
 0.914
SHH41527.1
Protein of unknown function.
    
 0.898
Your Current Organism:
Jatrophihabitans endophyticus
NCBI taxonomy Id: 1206085
Other names: DSM 45627, Frankia sp. S9-650, J. endophyticus, Jatrophihabitans endophyticus Madhaiyan et al. 2013, KACC 16232, strain S9-650
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