STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH19365.1Cytochrome c-type biogenesis protein CcsB. (333 aa)    
Predicted Functional Partners:
SHH19332.1
Cytochrome c biogenesis protein.
  
 0.996
SHH19285.1
Cytochrome c-type biogenesis protein.
 
  
 0.995
SHH19249.1
Thiol-disulfide isomerase or thioredoxin.
 
  
 0.985
SHH18986.1
Uroporphyrinogen III methyltransferase / synthase.
  
    0.848
SHH19215.1
Broad specificity phosphatase PhoE.
  
    0.744
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.731
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
 
  
 0.695
SHG59113.1
Menaquinol-cytochrome c reductase cytochrome b subunit precursor.
  
  
 0.691
SHG59189.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
 
  
 0.648
SHG73412.1
Oxygen-dependent protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
  
 0.622
Your Current Organism:
Jatrophihabitans endophyticus
NCBI taxonomy Id: 1206085
Other names: DSM 45627, Frankia sp. S9-650, J. endophyticus, Jatrophihabitans endophyticus Madhaiyan et al. 2013, KACC 16232, strain S9-650
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