STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH22995.1Methyltransferase domain-containing protein. (250 aa)    
Predicted Functional Partners:
SHG62597.1
Methyltransferase domain-containing protein.
 
     0.911
SHF57156.1
Amino acid adenylation domain-containing protein.
  
 0.764
SHG29982.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 
  0.545
SHH32814.1
Hypothetical protein.
  
  
 0.512
SHH22945.1
Hypothetical protein.
       0.454
SHH58528.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
    
  0.433
Your Current Organism:
Jatrophihabitans endophyticus
NCBI taxonomy Id: 1206085
Other names: DSM 45627, Frankia sp. S9-650, J. endophyticus, Jatrophihabitans endophyticus Madhaiyan et al. 2013, KACC 16232, strain S9-650
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.