STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH53578.1HNH endonuclease. (383 aa)    
Predicted Functional Partners:
SHH53536.1
Site-specific DNA recombinase.
  
    0.774
SHH49668.1
HNH endonuclease; Partial gene; manually curated.
  
     0.772
SHH65325.1
Hypothetical protein; Partial gene; manually curated.
  
     0.772
SHH31256.1
Type IV secretory system Conjugative DNA transfer.
 
 
 
 0.677
SHH53066.1
Hypothetical protein.
  
   
 0.657
cysC
Adenylylsulfate kinase /sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
    
  0.561
SHG46847.1
Protein of unknown function; Partial gene; manually curated.
  
     0.556
SHF84464.1
Protein of unknown function; Partial gene; manually curated.
  
     0.548
SHH53618.1
mRNA interferase MazF.
 
    0.539
SHG20878.1
Uncharacterized HhH-GPD family protein.
  
     0.525
Your Current Organism:
Jatrophihabitans endophyticus
NCBI taxonomy Id: 1206085
Other names: DSM 45627, Frankia sp. S9-650, J. endophyticus, Jatrophihabitans endophyticus Madhaiyan et al. 2013, KACC 16232, strain S9-650
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.