STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000308495_00403Unannotated protein. (40 aa)    
Predicted Functional Partners:
GCA_000308495_06742
Unannotated protein.
     
 0.583
GCA_000308495_03573
Unannotated protein.
   
 
 0.569
GCA_000308495_00402
Unannotated protein.
       0.533
GCA_000308495_02596
Unannotated protein.
  
    0.526
GCA_000308495_02484
Unannotated protein.
       0.520
GCA_000308495_02605
Unannotated protein.
       0.520
GCA_000308495_02606
Unannotated protein.
       0.520
GCA_000308495_02744
Unannotated protein.
       0.480
GCA_000308495_02746
Unannotated protein.
       0.480
Your Current Organism:
Nocardia brevicatena
NCBI taxonomy Id: 1206725
Other names: N. brevicatena NBRC 12119, Nocardia brevicatena ATCC 15333, Nocardia brevicatena DSM 43024, Nocardia brevicatena IFM 283, Nocardia brevicatena IFO 12119, Nocardia brevicatena NBRC 12119, Nocardia brevicatena str. NBRC 12119, Nocardia brevicatena strain NBRC 12119
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.