STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000308595_05136Unannotated protein. (289 aa)    
Predicted Functional Partners:
GCA_000308595_05135
Unannotated protein.
 
   
 0.953
GCA_000308595_02903
Unannotated protein.
  
  
 0.748
GCA_000308595_00271
Unannotated protein.
  
  
 0.733
GCA_000308595_04196
Unannotated protein.
  
  
 0.733
GCA_000308595_06027
Unannotated protein.
  
  
 0.733
GCA_000308595_04574
Unannotated protein.
     
 0.602
GCA_000308595_02711
Unannotated protein.
  
  
 0.577
GCA_000308595_06331
Unannotated protein.
   
  
 0.568
GCA_000308595_05134
Unannotated protein.
       0.537
GCA_000308595_03124
Unannotated protein.
  
  
 0.504
Your Current Organism:
Nocardia higoensis
NCBI taxonomy Id: 1206730
Other names: N. higoensis NBRC 100133, Nocardia higoensis NBRC 100133, Nocardia higoensis str. NBRC 100133, Nocardia higoensis strain NBRC 100133
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.