STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C100_20975Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (248 aa)    
Predicted Functional Partners:
C100_00520
Penicillin amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.976
C100_20960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
C100_20965
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
C100_20970
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
C100_14170
Isopenicillin N-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.641
C100_17010
Isopenicillin N-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.540
C100_04225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.523
C100_21690
Penicillin acylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
C100_02590
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.455
C100_11550
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.435
Your Current Organism:
Sphingobium sp. C100
NCBI taxonomy Id: 1207055
Other names: S. sp. C100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.