STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
P24_01905Low-affinity zinc transport protein; COG0523 Putative GTPases (G3E family). (413 aa)    
Predicted Functional Partners:
P24_01910
Hypothetical protein.
 
    0.927
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.707
cobN
Cobaltochelatase subunit CobN; COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.
  
  
 0.624
dksA
RNA polymerase-binding protein DksA (DnaK suppressor protein); Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.615
P24_01895
COG0811 Biopolymer transport proteins.
  
  
 0.567
P24_01900
Hypothetical protein.
  
    0.567
rpmB
COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.560
P24_01880
COG1959 Predicted transcriptional regulator.
 
     0.518
P24_01885
Putative TonB-dependent receptor; COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
    0.514
map
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
   0.513
Your Current Organism:
Oceanibaculum indicum
NCBI taxonomy Id: 1207063
Other names: O. indicum P24, Oceanibaculum indicum P24, Oceanibaculum indicum str. P24, Oceanibaculum indicum strain P24
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.