STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B30_18032Hypothetical protein; COG4235 Cytochrome c biogenesis factor. (387 aa)    
Predicted Functional Partners:
B30_18017
Cytochrome c-type biogenesis protein CcmF; COG1138 Cytochrome c biogenesis factor.
 
 
 0.969
B30_18022
Periplasmic protein thiol--disulfide oxidoreductase DsbE; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
  
 0.967
B30_18027
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
 
  
 0.961
B30_18012
COG3462 Predicted membrane protein.
 
     0.881
B30_18007
COG0642 Signal transduction histidine kinase.
 
     0.875
B30_17997
Calcium-binding EF-hand-containing protein; COG5126 Ca2+-binding protein (EF-Hand superfamily).
 
     0.843
B30_18077
Thiol:disulfide interchange protein DsbD 1 precursor; COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis.
  
   
 0.814
B30_17987
Hypothetical protein; COG0607 Rhodanese-related sulfurtransferase.
 
     0.808
B30_18002
Two component transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
     0.783
B30_18082
Hypothetical protein.
  
     0.767
Your Current Organism:
Celeribacter baekdonensis
NCBI taxonomy Id: 1208323
Other names: C. baekdonensis B30, Celeribacter baekdonensis B30, Celeribacter baekdonensis str. B30, Celeribacter baekdonensis strain B30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.